J3_6O3M_004

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6O3M|1|QA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O3M_004 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1635

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6O3M|1|QA|C|826
6O3M|1|QA|U|827
6O3M|1|QA|A|828
6O3M|1|QA|G|829
*
6O3M|1|QA|C|857
6O3M|1|QA|G|858
6O3M|1|QA|A|859
6O3M|1|QA|A|860
6O3M|1|QA|G|861
*
6O3M|1|QA|C|868
6O3M|1|QA|G|869
6O3M|1|QA|U|870
6O3M|1|QA|U|871
6O3M|1|QA|A|872
6O3M|1|QA|A|873
6O3M|1|QA|G|874

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QH

30S ribosomal protein S8

Chain QX

mRNA