J3_6O3M_070

3D structure

PDB id

6O3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.97 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6O3M|1|XA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O3M_070 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1687

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6O3M|1|XA|C|990
6O3M|1|XA|U|991
6O3M|1|XA|U|992
6O3M|1|XA|G|993
6O3M|1|XA|A|994
6O3M|1|XA|C|995
6O3M|1|XA|A|996
6O3M|1|XA|U|997
*
6O3M|1|XA|A|1044
6O3M|1|XA|C|1045
6O3M|1|XA|A|1046
6O3M|1|XA|G|1047
*
6O3M|1|XA|C|1210
6O3M|1|XA|U|1211
6O3M|1|XA|U|1212
6O3M|1|XA|A|1213
6O3M|1|XA|C|1214
6O3M|1|XA|G|1215

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XC

30S ribosomal protein S3

Chain XN

30S ribosomal protein S14 type Z