J3_6O7K_012

3D structure

PDB id

6O7K (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

6O7K|1|g|U|1240, 6O7K|1|g|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O7K_012 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.182

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6O7K|1|g|C|1237
6O7K|1|g|A|1238
6O7K|1|g|A|1239
6O7K|1|g|U|1240
6O7K|1|g|G|1241
*
6O7K|1|g|C|1296
6O7K|1|g|G|1297
6O7K|1|g|U|1298
6O7K|1|g|A|1299
6O7K|1|g|G|1300
6O7K|1|g|U|1301
6O7K|1|g|C|1302
6O7K|1|g|C|1303
*
6O7K|1|g|G|1334
6O7K|1|g|U|1335
6O7K|1|g|C|1336
6O7K|1|g|G|1337

Current chains

Chain g

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S7

Chain s

30S ribosomal protein S13