J3_6O8W_016

3D structure

PDB id

6O8W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01

Experimental method

ELECTRON MICROSCOPY

Resolution

3.53 Å

Loop

Sequence

CUAA*UGCAG*CAUUAAG

Length

16 nucleotides

Bulged bases

6O8W|1|a|U|887, 6O8W|1|a|A|889

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O8W_016 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1779

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6O8W|1|a|C|841
6O8W|1|a|U|842
6O8W|1|a|A|843
6O8W|1|a|A|844
*
6O8W|1|a|U|873
6O8W|1|a|G|874
6O8W|1|a|C|875
6O8W|1|a|A|876
6O8W|1|a|G|877
*
6O8W|1|a|C|884
6O8W|1|a|A|885
6O8W|1|a|U|886
6O8W|1|a|U|887
6O8W|1|a|A|888
6O8W|1|a|A|889
6O8W|1|a|G|890

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S8