J3_6O8W_024
3D structure
- PDB id
- 6O8W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class01
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.53 Å
Loop
- Sequence
- CUUG*CGAUAGUGAACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 6O8W|1|A|U|35, 6O8W|1|A|U|488, 6O8W|1|A|C|496
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6O8W_024 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.1668
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
6O8W|1|A|C|33
6O8W|1|A|U|34
6O8W|1|A|U|35
6O8W|1|A|G|36
*
6O8W|1|A|C|485
6O8W|1|A|G|486
6O8W|1|A|A|487
6O8W|1|A|U|488
6O8W|1|A|A|489
6O8W|1|A|G|490
6O8W|1|A|U|491
6O8W|1|A|G|492
6O8W|1|A|A|493
6O8W|1|A|A|494
6O8W|1|A|C|495
6O8W|1|A|C|496
6O8W|1|A|A|497
6O8W|1|A|G|498
6O8W|1|A|U|499
6O8W|1|A|A|500
6O8W|1|A|C|501
*
6O8W|1|A|G|508
6O8W|1|A|G|509
6O8W|1|A|A|510
6O8W|1|A|A|511
6O8W|1|A|A|512
6O8W|1|A|G|513
Current chains
- Chain A
- 50S subunit
Nearby chains
- Chain 4
- 50S ribosomal protein L34
- Chain E
- 50S ribosomal protein L4
- Chain R
- 50S ribosomal protein L20
- Chain U
- 50S ribosomal protein L23
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