J3_6O8X_005

3D structure

PDB id

6O8X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class02

Experimental method

ELECTRON MICROSCOPY

Resolution

3.68 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O8X_005 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.1206

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.1

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

6O8X|1|A|C|738
6O8X|1|A|A|739
6O8X|1|A|G|740
*
6O8X|1|A|C|772
6O8X|1|A|G|773
6O8X|1|A|A|774
6O8X|1|A|A|775
6O8X|1|A|C|776
*
6O8X|1|A|G|800
6O8X|1|A|A|801
6O8X|1|A|U|802
6O8X|1|A|G|803

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2