J3_6O8Z_016

3D structure

PDB id

6O8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM image reconstruction of the 70S Ribosome Enterococcus faecalis Class04

Experimental method

ELECTRON MICROSCOPY

Resolution

3.49 Å

Loop

Sequence

CUAA*UGCAG*CAUUAAG

Length

16 nucleotides

Bulged bases

6O8Z|1|a|U|887, 6O8Z|1|a|A|889

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O8Z_016 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1593

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6O8Z|1|a|C|841
6O8Z|1|a|U|842
6O8Z|1|a|A|843
6O8Z|1|a|A|844
*
6O8Z|1|a|U|873
6O8Z|1|a|G|874
6O8Z|1|a|C|875
6O8Z|1|a|A|876
6O8Z|1|a|G|877
*
6O8Z|1|a|C|884
6O8Z|1|a|A|885
6O8Z|1|a|U|886
6O8Z|1|a|U|887
6O8Z|1|a|A|888
6O8Z|1|a|A|889
6O8Z|1|a|G|890

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S8