J3_6O9J_006

3D structure

PDB id

6O9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Elongation Competent Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O9J_006 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.1721

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

6O9J|1|B|G|1055
6O9J|1|B|G|1056
6O9J|1|B|A|1057
*
6O9J|1|B|U|1081
6O9J|1|B|U|1082
6O9J|1|B|U|1083
6O9J|1|B|A|1084
6O9J|1|B|A|1085
6O9J|1|B|A|1086
6O9J|1|B|G|1087
*
6O9J|1|B|C|1102
6O9J|1|B|A|1103
6O9J|1|B|C|1104

Current chains

Chain B

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L36

Chain 6

50S ribosomal protein L11