J3_6O9J_007

3D structure

PDB id

6O9J (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Elongation Competent Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6O9J_007 not in the Motif Atlas

Homologous match to J3_5J7L_041

Geometric discrepancy: 0.0893

The information below is about J3_5J7L_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.6

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6O9J|1|B|C|1298
6O9J|1|B|G|1299
6O9J|1|B|G|1300
6O9J|1|B|A|1301
6O9J|1|B|A|1302
6O9J|1|B|G|1303
*
6O9J|1|B|C|1625
6O9J|1|B|A|1626
6O9J|1|B|G|1627
*
6O9J|1|B|C|1639
6O9J|1|B|A|1640
6O9J|1|B|A|1641
6O9J|1|B|G|1642

Current chains

Chain B

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L17