J3_6OF6_008

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OF6_008 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1704

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6OF6|1|QA|C|990
6OF6|1|QA|U|991
6OF6|1|QA|U|992
6OF6|1|QA|G|993
6OF6|1|QA|A|994
6OF6|1|QA|C|995
6OF6|1|QA|A|996
6OF6|1|QA|U|997
*
6OF6|1|QA|A|1044
6OF6|1|QA|C|1045
6OF6|1|QA|A|1046
6OF6|1|QA|G|1047
*
6OF6|1|QA|C|1210
6OF6|1|QA|U|1211
6OF6|1|QA|U|1212
6OF6|1|QA|A|1213
6OF6|1|QA|C|1214
6OF6|1|QA|G|1215

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QN

30S ribosomal protein S14 type Z

Chain YA

Large subunit ribosomal RNA; LSU rRNA