J3_6OF6_047

3D structure

PDB id

6OF6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OF6_047 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.552

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

6OF6|1|YA|G|1055
6OF6|1|YA|G|1056
6OF6|1|YA|A|1057
*
6OF6|1|YA|U|1081
6OF6|1|YA|U|1082
6OF6|1|YA|U|1083
6OF6|1|YA|A|1084
6OF6|1|YA|A|1085
6OF6|1|YA|A|1086
6OF6|1|YA|G|1087
*
6OF6|1|YA|C|1102
6OF6|1|YA|A|1103
6OF6|1|YA|C|1104

Current chains

Chain YA

23S rRNA

Nearby chains