3D structure

PDB id
6OF6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
Length
28 nucleotides
Bulged bases
6OF6|1|YA|U|504, 6OF6|1|YA|G|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OF6_070 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.0984
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6OF6|1|YA|G|30
6OF6|1|YA|C|31
*
6OF6|1|YA|G|474
6OF6|1|YA|U|475
6OF6|1|YA|G|476
6OF6|1|YA|A|477
6OF6|1|YA|A|478
6OF6|1|YA|A|479
6OF6|1|YA|A|480
6OF6|1|YA|G|481
6OF6|1|YA|A|482
6OF6|1|YA|A|483
6OF6|1|YA|C|484
*
6OF6|1|YA|G|496
6OF6|1|YA|A|497
6OF6|1|YA|G|498
6OF6|1|YA|U|499
6OF6|1|YA|G|500
6OF6|1|YA|A|501
6OF6|1|YA|A|502
6OF6|1|YA|A|503
6OF6|1|YA|U|504
6OF6|1|YA|A|505
6OF6|1|YA|G|506
6OF6|1|YA|A|507
6OF6|1|YA|G|508
6OF6|1|YA|C|509
6OF6|1|YA|C|510

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YU
50S ribosomal protein L20
Chain YW
50S ribosomal protein L22
Chain YY
50S ribosomal protein L24

Coloring options:


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