J3_6OFX_030

3D structure

PDB id

6OFX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Non-rotated ribosome (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OFX_030 not in the Motif Atlas

Homologous match to J3_5J7L_069

Geometric discrepancy: 0.1133

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6OFX|1|1|G|1424
6OFX|1|1|G|1425
6OFX|1|1|G|1426
6OFX|1|1|A|1427
6OFX|1|1|C|1428
6OFX|1|1|G|1429
*
6OFX|1|1|C|1564
6OFX|1|1|C|1565
*
6OFX|1|1|G|1568
6OFX|1|1|A|1569
6OFX|1|1|A|1570
6OFX|1|1|A|1571
6OFX|1|1|A|1572
6OFX|1|1|G|1573
6OFX|1|1|C|1574

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2