J3_6OGF_005

3D structure

PDB id

6OGF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UGA codon. Partially rotated ribosome with RF2 bound (Structure III).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

6OGF|1|1|A|1084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OGF_005 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.3957

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

6OGF|1|1|G|1055
6OGF|1|1|G|1056
6OGF|1|1|A|1057
*
6OGF|1|1|U|1081
6OGF|1|1|U|1082
6OGF|1|1|U|1083
6OGF|1|1|A|1084
6OGF|1|1|A|1085
6OGF|1|1|A|1086
6OGF|1|1|G|1087
*
6OGF|1|1|C|1102
6OGF|1|1|A|1103
6OGF|1|1|C|1104

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36