3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CCUG*CGAUAGUGAACCAGUAC*GGAAAG
Length
27 nucleotides
Bulged bases
6OGG|1|1|U|34, 6OGG|1|1|U|448, 6OGG|1|1|C|456
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OGG_026 not in the Motif Atlas
Homologous match to J3_5J7L_067
Geometric discrepancy: 0.1896
The information below is about J3_5J7L_067
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_30040.2
Basepair signature
cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
Number of instances in this motif group
7

Unit IDs

6OGG|1|1|C|32
6OGG|1|1|C|33
6OGG|1|1|U|34
6OGG|1|1|G|35
*
6OGG|1|1|C|445
6OGG|1|1|G|446
6OGG|1|1|A|447
6OGG|1|1|U|448
6OGG|1|1|A|449
6OGG|1|1|G|450
6OGG|1|1|U|451
6OGG|1|1|G|452
6OGG|1|1|A|453
6OGG|1|1|A|454
6OGG|1|1|C|455
6OGG|1|1|C|456
6OGG|1|1|A|457
6OGG|1|1|G|458
6OGG|1|1|U|459
6OGG|1|1|A|460
6OGG|1|1|C|461
*
6OGG|1|1|G|468
6OGG|1|1|G|469
6OGG|1|1|A|470
6OGG|1|1|A|471
6OGG|1|1|A|472
6OGG|1|1|G|473

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L34
Chain d
50S ribosomal protein L4
Chain q
50S ribosomal protein L20
Chain t
50S ribosomal protein L23

Coloring options:


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