3D structure

PDB id
6OGG (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S termination complex with RF2 bound to the UGA codon. Rotated ribosome with RF2 bound (Structure IV).
Experimental method
ELECTRON MICROSCOPY
Resolution
4.2 Å

Loop

Sequence
CAUC*GUA*UUUAAAG
Length
14 nucleotides
Bulged bases
6OGG|1|1|A|2518, 6OGG|1|1|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OGG_030 not in the Motif Atlas
Homologous match to J3_4WF9_009
Geometric discrepancy: 0.294
The information below is about J3_4WF9_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

6OGG|1|1|C|2517
6OGG|1|1|A|2518
6OGG|1|1|U|2519
6OGG|1|1|C|2520
*
6OGG|1|1|G|2545
6OGG|1|1|U|2546
6OGG|1|1|A|2547
*
6OGG|1|1|U|2561
6OGG|1|1|U|2562
6OGG|1|1|U|2563
6OGG|1|1|A|2564
6OGG|1|1|A|2565
6OGG|1|1|A|2566
6OGG|1|1|G|2567

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain c
50S ribosomal protein L3
Chain k
50S ribosomal protein L14

Coloring options:


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