J3_6OGI_009

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OGI_009 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.1065

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6OGI|1|1|C|2091
6OGI|1|1|U|2092
6OGI|1|1|G|2093
*
6OGI|1|1|C|2196
6OGI|1|1|U|2197
6OGI|1|1|A|2198
6OGI|1|1|A|2199
6OGI|1|1|C|2200
*
6OGI|1|1|G|2223
6OGI|1|1|G|2224
6OGI|1|1|A|2225
6OGI|1|1|C|2226
6OGI|1|1|A|2227
6OGI|1|1|G|2228

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28