J3_6OGI_017
3D structure
- PDB id
- 6OGI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GUUUAAUUC*GAAGAACCUUACC*GGGCUAC
- Length
- 29 nucleotides
- Bulged bases
- 6OGI|1|3|A|975, 6OGI|1|3|G|976
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OGI_017 not in the Motif Atlas
- Homologous match to J3_6CZR_020
- Geometric discrepancy: 0.2193
- The information below is about J3_6CZR_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86907.1
- Basepair signature
- cWW-F-F-F-tSW-F-tSH-tSS-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6OGI|1|3|G|954
6OGI|1|3|U|955
6OGI|1|3|U|956
6OGI|1|3|U|957
6OGI|1|3|A|958
6OGI|1|3|A|959
6OGI|1|3|U|960
6OGI|1|3|U|961
6OGI|1|3|C|962
*
6OGI|1|3|G|973
6OGI|1|3|A|974
6OGI|1|3|A|975
6OGI|1|3|G|976
6OGI|1|3|A|977
6OGI|1|3|A|978
6OGI|1|3|C|979
6OGI|1|3|C|980
6OGI|1|3|U|981
6OGI|1|3|U|982
6OGI|1|3|A|983
6OGI|1|3|C|984
6OGI|1|3|C|985
*
6OGI|1|3|G|1220
6OGI|1|3|G|1221
6OGI|1|3|G|1222
6OGI|1|3|C|1223
6OGI|1|3|U|1224
6OGI|1|3|A|1225
6OGI|1|3|C|1226
Current chains
- Chain 3
- 16S ribosomal RNA
Nearby chains
- Chain O
- 30S ribosomal protein S10
- Chain R
- 30S ribosomal protein S13
- Chain S
- 30S ribosomal protein S14
- Chain X
- 30S ribosomal protein S19
Coloring options: