J3_6OGI_022

3D structure

PDB id

6OGI (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex with RF2 bound to the UAG codon. Rotated ribosome conformation (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

6OGI|1|1|A|1084

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OGI_022 not in the Motif Atlas

Homologous match to J3_5J7L_040

Geometric discrepancy: 0.3753

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

6OGI|1|1|G|1055
6OGI|1|1|G|1056
6OGI|1|1|A|1057
*
6OGI|1|1|U|1081
6OGI|1|1|U|1082
6OGI|1|1|U|1083
6OGI|1|1|A|1084
6OGI|1|1|A|1085
6OGI|1|1|A|1086
6OGI|1|1|G|1087
*
6OGI|1|1|C|1102
6OGI|1|1|A|1103
6OGI|1|1|C|1104

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36