J3_6OIG_013

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUC*GAA*UAAAAG

Length

12 nucleotides

Bulged bases

6OIG|1|5|A|2703

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OIG_013 not in the Motif Atlas

Homologous match to J3_8C3A_010

Geometric discrepancy: 0.2293

The information below is about J3_8C3A_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91491.5

Basepair signature

cWW-F-tWW-tHW-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

6OIG|1|5|C|2664
6OIG|1|5|U|2665
6OIG|1|5|C|2666
*
6OIG|1|5|G|2690
6OIG|1|5|A|2691
6OIG|1|5|A|2692
*
6OIG|1|5|U|2701
6OIG|1|5|A|2702
6OIG|1|5|A|2703
6OIG|1|5|A|2704
6OIG|1|5|A|2705
6OIG|1|5|G|2706

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain J

60S ribosomal protein L11-B

Chain T

60S ribosomal protein L21-A