J3_6OIG_023

3D structure

PDB id

6OIG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAC*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OIG_023 not in the Motif Atlas

Homologous match to J3_8P9A_052

Geometric discrepancy: 0.4334

The information below is about J3_8P9A_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

6OIG|1|5|G|1230
6OIG|1|5|A|1231
6OIG|1|5|C|1232
*
6OIG|1|5|G|1256
6OIG|1|5|C|1257
6OIG|1|5|U|1258
6OIG|1|5|A|1259
6OIG|1|5|A|1260
6OIG|1|5|G|1261
6OIG|1|5|G|1262
*
6OIG|1|5|C|1277
6OIG|1|5|A|1278
6OIG|1|5|C|1279

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain q

60S acidic ribosomal protein P0,60S acidic ribosomal protein P0,AO, L1OE

Chain s

60S ribosomal protein L12-A