J3_6OIG_027
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUC*GCCUAUCGAUCC*GGUGCC
- Length
- 21 nucleotides
- Bulged bases
- 6OIG|1|5|A|2758, 6OIG|1|5|C|2760, 6OIG|1|5|C|2797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OIG_027 not in the Motif Atlas
- Homologous match to J3_8P9A_061
- Geometric discrepancy: 0.219
- The information below is about J3_8P9A_061
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6OIG|1|5|G|2651
6OIG|1|5|U|2652
6OIG|1|5|C|2653
*
6OIG|1|5|G|2754
6OIG|1|5|C|2755
6OIG|1|5|C|2756
6OIG|1|5|U|2757
6OIG|1|5|A|2758
6OIG|1|5|U|2759
6OIG|1|5|C|2760
6OIG|1|5|G|2761
6OIG|1|5|A|2762
6OIG|1|5|U|2763
6OIG|1|5|C|2764
6OIG|1|5|C|2765
*
6OIG|1|5|G|2793
6OIG|1|5|G|2794
6OIG|1|5|U|2795
6OIG|1|5|G|2796
6OIG|1|5|C|2797
6OIG|1|5|C|2798
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain Q
- 60S ribosomal protein L18-A
- Chain T
- 60S ribosomal protein L21-A
- Chain a
- 60S ribosomal protein L28
- Chain o
- 60S ribosomal protein L42-A
Coloring options: