J3_6OIG_031
3D structure
- PDB id
- 6OIG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 6OIG|1|5|A|398, 6OIG|1|5|A|402
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OIG_031 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.1952
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
6OIG|1|5|A|369
6OIG|1|5|U|370
6OIG|1|5|G|371
6OIG|1|5|A|372
6OIG|1|5|A|373
6OIG|1|5|A|374
6OIG|1|5|A|375
6OIG|1|5|G|376
6OIG|1|5|A|377
6OIG|1|5|A|378
6OIG|1|5|C|379
*
6OIG|1|5|G|390
6OIG|1|5|A|391
6OIG|1|5|G|392
6OIG|1|5|U|393
6OIG|1|5|G|394
6OIG|1|5|A|395
6OIG|1|5|A|396
6OIG|1|5|A|397
6OIG|1|5|A|398
6OIG|1|5|A|399
6OIG|1|5|G|400
6OIG|1|5|U|401
6OIG|1|5|A|402
6OIG|1|5|C|403
6OIG|1|5|G|404
*
6OIG|1|8|C|19
6OIG|1|8|U|20
Current chains
- Chain 5
- 25S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain P
- 60S ribosomal protein L17-A
- Chain Y
- 60S ribosomal protein L26-A
- Chain l
- 60S ribosomal protein L39
Coloring options: