J3_6OJ2_004

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6OJ2|1|QA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OJ2_004 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.1651

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6OJ2|1|QA|C|826
6OJ2|1|QA|U|827
6OJ2|1|QA|A|828
6OJ2|1|QA|G|829
*
6OJ2|1|QA|C|857
6OJ2|1|QA|G|858
6OJ2|1|QA|A|859
6OJ2|1|QA|A|860
6OJ2|1|QA|G|861
*
6OJ2|1|QA|C|868
6OJ2|1|QA|G|869
6OJ2|1|QA|U|870
6OJ2|1|QA|U|871
6OJ2|1|QA|A|872
6OJ2|1|QA|A|873
6OJ2|1|QA|G|874

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QH

30S ribosomal protein S8