3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CAAUG*CCCAGUUC*GCCG
Length
17 nucleotides
Bulged bases
6OJ2|1|QA|U|1240
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OJ2_013 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.1603
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

6OJ2|1|QA|C|1237
6OJ2|1|QA|A|1238
6OJ2|1|QA|A|1239
6OJ2|1|QA|U|1240
6OJ2|1|QA|G|1241
*
6OJ2|1|QA|C|1296
6OJ2|1|QA|C|1297
6OJ2|1|QA|C|1298
6OJ2|1|QA|A|1299
6OJ2|1|QA|G|1300
6OJ2|1|QA|U|1301
6OJ2|1|QA|U|1302
6OJ2|1|QA|C|1303
*
6OJ2|1|QA|G|1334
6OJ2|1|QA|C|1335
6OJ2|1|QA|C|1336
6OJ2|1|QA|G|1337

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QG
30S ribosomal protein S7
Chain QM
30S ribosomal protein S13
Chain QU
30S ribosomal protein Thx
Chain QW
Transfer RNA; tRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1945 s