3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
GC*GUGAAAAGAAC*GAGUGAAAUAGAGCC
Length
28 nucleotides
Bulged bases
6OJ2|1|RA|U|504, 6OJ2|1|RA|G|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OJ2_062 not in the Motif Atlas
Homologous match to J3_9DFE_002
Geometric discrepancy: 0.1109
The information below is about J3_9DFE_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92134.2
Basepair signature
cWW-cWW-cWW-F-tWH-cSS-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-cSW-F-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6OJ2|1|RA|G|30
6OJ2|1|RA|C|31
*
6OJ2|1|RA|G|474
6OJ2|1|RA|U|475
6OJ2|1|RA|G|476
6OJ2|1|RA|A|477
6OJ2|1|RA|A|478
6OJ2|1|RA|A|479
6OJ2|1|RA|A|480
6OJ2|1|RA|G|481
6OJ2|1|RA|A|482
6OJ2|1|RA|A|483
6OJ2|1|RA|C|484
*
6OJ2|1|RA|G|496
6OJ2|1|RA|A|497
6OJ2|1|RA|G|498
6OJ2|1|RA|U|499
6OJ2|1|RA|G|500
6OJ2|1|RA|A|501
6OJ2|1|RA|A|502
6OJ2|1|RA|A|503
6OJ2|1|RA|U|504
6OJ2|1|RA|A|505
6OJ2|1|RA|G|506
6OJ2|1|RA|A|507
6OJ2|1|RA|G|508
6OJ2|1|RA|C|509
6OJ2|1|RA|C|510

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RU
50S ribosomal protein L20
Chain RW
50S ribosomal protein L22
Chain RY
50S ribosomal protein L24

Coloring options:


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