J3_6OJ2_069

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCCUAAG*UAGGAAUCU*AGC

Length

19 nucleotides

Bulged bases

6OJ2|1|XA|C|48, 6OJ2|1|XA|A|50, 6OJ2|1|XA|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OJ2_069 not in the Motif Atlas

Homologous match to J3_4LFB_014

Geometric discrepancy: 0.0837

The information below is about J3_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

6OJ2|1|XA|G|46
6OJ2|1|XA|C|47
6OJ2|1|XA|C|48
6OJ2|1|XA|U|49
6OJ2|1|XA|A|50
6OJ2|1|XA|A|51
6OJ2|1|XA|G|52
*
6OJ2|1|XA|U|359
6OJ2|1|XA|A|360
6OJ2|1|XA|G|361
6OJ2|1|XA|G|362
6OJ2|1|XA|A|363
6OJ2|1|XA|A|364
6OJ2|1|XA|U|365
6OJ2|1|XA|C|366
6OJ2|1|XA|U|367
*
6OJ2|1|XA|A|393
6OJ2|1|XA|G|394
6OJ2|1|XA|C|395

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XP

30S ribosomal protein S16