3D structure

PDB id
6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CUUGACAU*ACAG*CUUACG
Length
18 nucleotides
Bulged bases
6OJ2|1|XA|C|1214
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OJ2_071 not in the Motif Atlas
Homologous match to J3_4LFB_016
Geometric discrepancy: 0.1785
The information below is about J3_4LFB_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_76475.2
Basepair signature
cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW
Number of instances in this motif group
2

Unit IDs

6OJ2|1|XA|C|990
6OJ2|1|XA|U|991
6OJ2|1|XA|U|992
6OJ2|1|XA|G|993
6OJ2|1|XA|A|994
6OJ2|1|XA|C|995
6OJ2|1|XA|A|996
6OJ2|1|XA|U|997
*
6OJ2|1|XA|A|1044
6OJ2|1|XA|C|1045
6OJ2|1|XA|A|1046
6OJ2|1|XA|G|1047
*
6OJ2|1|XA|C|1210
6OJ2|1|XA|U|1211
6OJ2|1|XA|U|1212
6OJ2|1|XA|A|1213
6OJ2|1|XA|C|1214
6OJ2|1|XA|G|1215

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XC
30S ribosomal protein S3
Chain XN
30S ribosomal protein S14 type Z

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2087 s