J3_6OJ2_071

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

6OJ2|1|XA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OJ2_071 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1785

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

6OJ2|1|XA|C|990
6OJ2|1|XA|U|991
6OJ2|1|XA|U|992
6OJ2|1|XA|G|993
6OJ2|1|XA|A|994
6OJ2|1|XA|C|995
6OJ2|1|XA|A|996
6OJ2|1|XA|U|997
*
6OJ2|1|XA|A|1044
6OJ2|1|XA|C|1045
6OJ2|1|XA|A|1046
6OJ2|1|XA|G|1047
*
6OJ2|1|XA|C|1210
6OJ2|1|XA|U|1211
6OJ2|1|XA|U|1212
6OJ2|1|XA|A|1213
6OJ2|1|XA|C|1214
6OJ2|1|XA|G|1215

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XC

30S ribosomal protein S3

Chain XN

30S ribosomal protein S14 type Z