J3_6OJ2_083

3D structure

PDB id

6OJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) bound to the near-cognate 70S A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

6OJ2|1|YA|A|1084, 6OJ2|1|YA|A|1085

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OJ2_083 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.5563

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

6OJ2|1|YA|G|1055
6OJ2|1|YA|G|1056
6OJ2|1|YA|A|1057
*
6OJ2|1|YA|U|1081
6OJ2|1|YA|U|1082
6OJ2|1|YA|U|1083
6OJ2|1|YA|A|1084
6OJ2|1|YA|A|1085
6OJ2|1|YA|A|1086
6OJ2|1|YA|G|1087
*
6OJ2|1|YA|C|1102
6OJ2|1|YA|A|1103
6OJ2|1|YA|C|1104

Current chains

Chain YA

23S rRNA

Nearby chains