J3_6OKK_006
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCAG*CUAGUAA*UGACUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OKK_006 not in the Motif Atlas
- Homologous match to J3_4V88_035
- Geometric discrepancy: 0.1593
- The information below is about J3_4V88_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.1
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6OKK|1|A|C|1262
6OKK|1|A|C|1263
6OKK|1|A|A|1264
6OKK|1|A|G|1265
*
6OKK|1|A|C|1878
6OKK|1|A|U|1879
6OKK|1|A|A|1880
6OKK|1|A|G|1881
6OKK|1|A|U|1882
6OKK|1|A|A|1883
6OKK|1|A|A|1884
*
6OKK|1|A|U|1906
6OKK|1|A|G|1907
6OKK|1|A|A|1908
6OKK|1|A|C|1909
6OKK|1|A|U|1910
6OKK|1|A|A|1911
6OKK|1|A|C|1912
6OKK|1|A|G|1913
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein S5
- Chain M
- 40S ribosomal protein S16
- Chain e
- 40S ribosomal protein S28e
- Chain g
- Transfer RNA; tRNA
Coloring options: