J3_6OKK_009
3D structure
- PDB id
- 6OKK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UAAGAC*GGAUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 6OKK|1|A|G|1691, 6OKK|1|A|U|1693
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OKK_009 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.1929
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
6OKK|1|A|U|1316
6OKK|1|A|A|1317
6OKK|1|A|A|1318
6OKK|1|A|G|1319
6OKK|1|A|A|1320
6OKK|1|A|C|1321
*
6OKK|1|A|G|1364
6OKK|1|A|G|1365
6OKK|1|A|A|1366
6OKK|1|A|U|1367
6OKK|1|A|G|1368
*
6OKK|1|A|U|1688
6OKK|1|A|U|1689
6OKK|1|A|A|1690
6OKK|1|A|G|1691
6OKK|1|A|A|1692
6OKK|1|A|U|1693
6OKK|1|A|G|1694
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain O
- 40S ribosomal protein S10
- Chain T
- 40S ribosomal protein S29
Coloring options: