J3_6OLE_028
3D structure
- PDB id
- 6OLE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AP and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGG*CUGAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OLE_028 not in the Motif Atlas
- Geometric match to J3_5J7L_044
- Geometric discrepancy: 0.1486
- The information below is about J3_5J7L_044
- Detailed Annotation
- Kink-turn 3-way junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
6OLE|1|t|C|3908
6OLE|1|t|G|3909
6OLE|1|t|G|3910
*
6OLE|1|t|C|4044
6OLE|1|t|U|4045
6OLE|1|t|G|4046
6OLE|1|t|A|4047
6OLE|1|t|C|4048
*
6OLE|1|t|G|4130
6OLE|1|t|G|4131
6OLE|1|t|A|4132
6OLE|1|t|C|4133
6OLE|1|t|A|4134
6OLE|1|t|G|4135
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain I
- 60S ribosomal protein L7a
- Chain O
- 60S ribosomal protein L15
Coloring options: