3D structure

PDB id
6OLF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
UUCUUAG*CGAGAC*GCAAUAA
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_6OLF_013 not in the Motif Atlas
Geometric match to J3_8C3A_042
Geometric discrepancy: 0.327
The information below is about J3_8C3A_042
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_67213.1
Basepair signature
cWW-F-F-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
Number of instances in this motif group
1

Unit IDs

6OLF|1|S2|U|1339
6OLF|1|S2|U|1340
6OLF|1|S2|C|1341
6OLF|1|S2|U|1342
6OLF|1|S2|U|1343
6OLF|1|S2|A|1344
6OLF|1|S2|G|1345
*
6OLF|1|S2|C|1384
6OLF|1|S2|G|1385
6OLF|1|S2|A|1386
6OLF|1|S2|G|1387
6OLF|1|S2|A|1388
6OLF|1|S2|C|1389
*
6OLF|1|S2|G|1481
6OLF|1|S2|C|1482
6OLF|1|S2|A|1483
6OLF|1|S2|A|1484
6OLF|1|S2|U|1485
6OLF|1|S2|A|1486
6OLF|1|S2|A|1487

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SC
40S ribosomal protein S2
Chain SD
40S ribosomal protein S3
Chain SQ
40S ribosomal protein S16
Chain SR
40S ribosomal protein S17
Chain SU
40S ribosomal protein S20
Chain Sd
40S ribosomal protein S29

Coloring options:


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