J3_6OLF_032
3D structure
- PDB id
- 6OLF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (CDH1-RNC) stalled by a drug-like molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CA*UUGAAAAGAAC*GAGUUCAAGAGGGCG
- Length
- 28 nucleotides
- Bulged bases
- 6OLF|1|t|G|403, 6OLF|1|t|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OLF_032 not in the Motif Atlas
- Geometric match to J3_5TBW_062
- Geometric discrepancy: 0.129
- The information below is about J3_5TBW_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6OLF|1|D|C|19
6OLF|1|D|A|20
*
6OLF|1|t|U|374
6OLF|1|t|U|375
6OLF|1|t|G|376
6OLF|1|t|A|377
6OLF|1|t|A|378
6OLF|1|t|A|379
6OLF|1|t|A|380
6OLF|1|t|G|381
6OLF|1|t|A|382
6OLF|1|t|A|383
6OLF|1|t|C|384
*
6OLF|1|t|G|395
6OLF|1|t|A|396
6OLF|1|t|G|397
6OLF|1|t|U|398
6OLF|1|t|U|399
6OLF|1|t|C|400
6OLF|1|t|A|401
6OLF|1|t|A|402
6OLF|1|t|G|403
6OLF|1|t|A|404
6OLF|1|t|G|405
6OLF|1|t|G|406
6OLF|1|t|G|407
6OLF|1|t|C|408
6OLF|1|t|G|409
Current chains
- Chain D
- 5.8S ribosomal RNA
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain Q
- 60S ribosomal protein L17
- Chain Z
- 60S ribosomal protein L26
- Chain m
- 60S ribosomal protein L39
- Chain y
- Cadherin-1
Coloring options: