J3_6OLG_008

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

6OLG|1|A2|A|2375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OLG_008 not in the Motif Atlas

Homologous match to J3_5TBW_008

Geometric discrepancy: 0.1534

The information below is about J3_5TBW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

6OLG|1|A2|C|2372
6OLG|1|A2|G|2373
6OLG|1|A2|A|2374
6OLG|1|A2|A|2375
6OLG|1|A2|G|2376
6OLG|1|A2|U|2377
6OLG|1|A2|G|2378
*
6OLG|1|A2|C|2784
6OLG|1|A2|A|2785
6OLG|1|A2|A|2786
*
6OLG|1|A2|U|2798
6OLG|1|A2|C|2799
6OLG|1|A2|U|2800
6OLG|1|A2|G|2801

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AR

60S ribosomal protein L19

Chain Ag

60S ribosomal protein L34