J3_6OLG_012

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OLG_012 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.2899

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6OLG|1|A2|U|2554
6OLG|1|A2|G|2555
*
6OLG|1|A2|C|2564
6OLG|1|A2|G|2565
6OLG|1|A2|A|2566
6OLG|1|A2|C|2567
6OLG|1|A2|C|2568
*
6OLG|1|A2|G|2735
6OLG|1|A2|A|2736

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AZ

60S ribosomal protein L27

Chain Ag

60S ribosomal protein L34