J3_6OLG_028

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

6OLG|1|B1|G|1507, 6OLG|1|B1|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OLG_028 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1652

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6OLG|1|B1|C|1272
6OLG|1|B1|C|1273
6OLG|1|B1|G|1274
6OLG|1|B1|G|1275
6OLG|1|B1|A|1276
6OLG|1|B1|C|1277
*
6OLG|1|B1|G|1320
6OLG|1|B1|G|1321
6OLG|1|B1|G|1322
6OLG|1|B1|U|1323
6OLG|1|B1|G|1324
*
6OLG|1|B1|U|1504
6OLG|1|B1|U|1505
6OLG|1|B1|A|1506
6OLG|1|B1|G|1507
6OLG|1|B1|A|1508
6OLG|1|B1|U|1509
6OLG|1|B1|G|1510

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BK

40S ribosomal protein S10

Chain Bd

40S ribosomal protein S29

Chain Bf

40S ribosomal protein S27a