J3_6OLG_041

3D structure

PDB id

6OLG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex stalled by a drug-like small molecule (CDH1_RNC with PP tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAUC*GUUG*CACUAAUA

Length

16 nucleotides

Bulged bases

6OLG|1|A2|A|4426, 6OLG|1|A2|U|4427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OLG_041 not in the Motif Atlas

Geometric match to J3_4V9F_009

Geometric discrepancy: 0.1885

The information below is about J3_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68010.1

Basepair signature

cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

6OLG|1|A2|U|4425
6OLG|1|A2|A|4426
6OLG|1|A2|U|4427
6OLG|1|A2|C|4428
*
6OLG|1|A2|G|4453
6OLG|1|A2|U|4454
6OLG|1|A2|U|4455
6OLG|1|A2|G|4456
*
6OLG|1|A2|C|4468
6OLG|1|A2|A|4469
6OLG|1|A2|C|4470
6OLG|1|A2|U|4471
6OLG|1|A2|A|4472
6OLG|1|A2|A|4473
6OLG|1|A2|U|4474
6OLG|1|A2|A|4475

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AO

60S ribosomal protein L13a

Chain AV

60S ribosomal protein L23