J3_6OLI_002
3D structure
- PDB id
- 6OLI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AC*GAGAAUU*ACACU
- Length
- 14 nucleotides
- Bulged bases
- 6OLI|1|D|A|62, 6OLI|1|D|U|63
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OLI_002 not in the Motif Atlas
- Homologous match to J3_8C3A_060
- Geometric discrepancy: 0.218
- The information below is about J3_8C3A_060
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38265.2
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F
- Number of instances in this motif group
- 8
Unit IDs
6OLI|1|D|A|44
6OLI|1|D|C|45
*
6OLI|1|D|G|58
6OLI|1|D|A|59
6OLI|1|D|G|60
6OLI|1|D|A|61
6OLI|1|D|A|62
6OLI|1|D|U|63
6OLI|1|D|U|64
*
6OLI|1|D|A|95
6OLI|1|D|C|96
6OLI|1|D|A|97
6OLI|1|D|C|98
6OLI|1|D|U|99
Current chains
- Chain D
- 5.8S ribosomal RNA
Nearby chains
- Chain Y
- 60S ribosomal protein L23a
- Chain i
- 60S ribosomal protein L35
- Chain k
- 60S ribosomal protein L37
- Chain m
- 60S ribosomal protein L39
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