J3_6OLI_024
3D structure
- PDB id
- 6OLI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAG*CCAUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 6OLI|1|t|U|2767, 6OLI|1|t|A|2768
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OLI_024 not in the Motif Atlas
- Homologous match to J3_8C3A_007
- Geometric discrepancy: 0.1464
- The information below is about J3_8C3A_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_74051.1
- Basepair signature
- cWW-tSH-tWW-tHW-F-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
6OLI|1|t|G|2381
6OLI|1|t|A|2382
6OLI|1|t|A|2383
6OLI|1|t|G|2384
*
6OLI|1|t|C|2764
6OLI|1|t|C|2765
6OLI|1|t|A|2766
6OLI|1|t|U|2767
6OLI|1|t|A|2768
6OLI|1|t|U|2769
6OLI|1|t|C|2770
*
6OLI|1|t|G|2779
6OLI|1|t|U|2780
6OLI|1|t|C|2781
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain h
- 60S ribosomal protein L34
- Chain k
- 60S ribosomal protein L37
- Chain m
- 60S ribosomal protein L39
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