J3_6OLI_027

3D structure

PDB id

6OLI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human ribosome nascent chain complex selectively stalled by a drug-like small molecule (USO1-RNC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OLI_027 not in the Motif Atlas

Homologous match to J3_8C3A_054

Geometric discrepancy: 0.2547

The information below is about J3_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16991.1

Basepair signature

cWW-F-cWW-F-F-cWW

Number of instances in this motif group

3

Unit IDs

6OLI|1|t|U|2554
6OLI|1|t|G|2555
*
6OLI|1|t|C|2564
6OLI|1|t|G|2565
6OLI|1|t|A|2566
6OLI|1|t|C|2567
6OLI|1|t|C|2568
*
6OLI|1|t|G|2735
6OLI|1|t|A|2736

Current chains

Chain t

28S ribosomal RNA

Nearby chains

Chain a

60S ribosomal protein L27

Chain h

60S ribosomal protein L34