J3_6OLZ_010

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAG*CCAUAUC*GUC

Length

14 nucleotides

Bulged bases

6OLZ|1|A2|U|2767, 6OLZ|1|A2|A|2768

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OLZ_010 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.1792

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6OLZ|1|A2|G|2381
6OLZ|1|A2|A|2382
6OLZ|1|A2|A|2383
6OLZ|1|A2|G|2384
*
6OLZ|1|A2|C|2764
6OLZ|1|A2|C|2765
6OLZ|1|A2|A|2766
6OLZ|1|A2|U|2767
6OLZ|1|A2|A|2768
6OLZ|1|A2|U|2769
6OLZ|1|A2|C|2770
*
6OLZ|1|A2|G|2779
6OLZ|1|A2|U|2780
6OLZ|1|A2|C|2781

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain Ag

60S ribosomal protein L34

Chain Aj

60S ribosomal protein L37

Chain Al

60S ribosomal protein L39