J3_6OLZ_018

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

6OLZ|1|A2|A|4426, 6OLZ|1|A2|U|4427

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OLZ_018 not in the Motif Atlas

Homologous match to J3_5TBW_014

Geometric discrepancy: 0.1505

The information below is about J3_5TBW_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_98597.1

Basepair signature

cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW

Number of instances in this motif group

2

Unit IDs

6OLZ|1|A2|U|4425
6OLZ|1|A2|A|4426
6OLZ|1|A2|U|4427
6OLZ|1|A2|C|4428
*
6OLZ|1|A2|G|4453
6OLZ|1|A2|U|4454
6OLZ|1|A2|U|4455
*
6OLZ|1|A2|A|4469
6OLZ|1|A2|C|4470
6OLZ|1|A2|U|4471
6OLZ|1|A2|A|4472
6OLZ|1|A2|A|4473
6OLZ|1|A2|U|4474
6OLZ|1|A2|A|4475

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AO

60S ribosomal protein L13a

Chain AV

60S ribosomal protein L23