J3_6OLZ_027

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OLZ_027 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.197

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6OLZ|1|B1|C|1218
6OLZ|1|B1|C|1219
6OLZ|1|B1|A|1220
6OLZ|1|B1|G|1221
*
6OLZ|1|B1|C|1645
6OLZ|1|B1|C|1646
6OLZ|1|B1|A|1647
6OLZ|1|B1|G|1648
6OLZ|1|B1|U|1649
6OLZ|1|B1|A|1650
6OLZ|1|B1|A|1651
*
6OLZ|1|B1|U|1673
6OLZ|1|B1|G|1674
6OLZ|1|B1|A|1675
6OLZ|1|B1|U|1676
6OLZ|1|B1|U|1677
6OLZ|1|B1|A|1678
6OLZ|1|B1|A|1679
6OLZ|1|B1|G|1680

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BF

40S ribosomal protein S5

Chain BQ

40S ribosomal protein S16

Chain Bc

40S ribosomal protein S28