J3_6OLZ_030

3D structure

PDB id

6OLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like molecule with PP tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

6OLZ|1|B1|G|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OLZ_030 not in the Motif Atlas

Geometric match to J3_4V88_038

Geometric discrepancy: 0.2351

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

6OLZ|1|B1|C|1272
6OLZ|1|B1|C|1273
6OLZ|1|B1|G|1274
6OLZ|1|B1|G|1275
6OLZ|1|B1|A|1276
6OLZ|1|B1|C|1277
*
6OLZ|1|B1|G|1320
6OLZ|1|B1|G|1321
6OLZ|1|B1|G|1322
6OLZ|1|B1|U|1323
6OLZ|1|B1|G|1324
*
6OLZ|1|B1|U|1504
6OLZ|1|B1|U|1505
6OLZ|1|B1|A|1506
6OLZ|1|B1|G|1507
6OLZ|1|B1|A|1508
6OLZ|1|B1|U|1509
6OLZ|1|B1|G|1510

Current chains

Chain B1

18S ribosomal RNA

Nearby chains

Chain BK

40S ribosomal protein S10

Chain Bd

40S ribosomal protein S29

Chain Bf

Ubiquitin-40S ribosomal protein S27a