J3_6OM6_017

3D structure

PDB id

6OM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of trans-translation inhibitor bound to E. coli 70S ribosome with P site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6OM6|1|2|U|871, 6OM6|1|2|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OM6_017 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0896

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6OM6|1|2|C|826
6OM6|1|2|U|827
6OM6|1|2|U|828
6OM6|1|2|G|829
*
6OM6|1|2|C|857
6OM6|1|2|G|858
6OM6|1|2|G|859
6OM6|1|2|A|860
6OM6|1|2|G|861
*
6OM6|1|2|C|868
6OM6|1|2|G|869
6OM6|1|2|U|870
6OM6|1|2|U|871
6OM6|1|2|A|872
6OM6|1|2|A|873
6OM6|1|2|G|874

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain m

30S ribosomal protein S8

Chain z

30S ribosomal protein S21