J3_6OM7_027
3D structure
- PDB id
- 6OM7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGG*CUGAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_6OM7_027 not in the Motif Atlas
- Geometric match to J3_5J7L_044
- Geometric discrepancy: 0.167
- The information below is about J3_5J7L_044
- Detailed Annotation
- Kink-turn 3-way junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
6OM7|1|t|C|3908
6OM7|1|t|G|3909
6OM7|1|t|G|3910
*
6OM7|1|t|C|4044
6OM7|1|t|U|4045
6OM7|1|t|G|4046
6OM7|1|t|A|4047
6OM7|1|t|C|4048
*
6OM7|1|t|G|4130
6OM7|1|t|G|4131
6OM7|1|t|A|4132
6OM7|1|t|C|4133
6OM7|1|t|A|4134
6OM7|1|t|G|4135
Current chains
- Chain t
- 28S ribosomal RNA
Nearby chains
- Chain A
- 60S ribosomal protein L8
- Chain I
- 60S ribosomal protein L7a
- Chain O
- 60S ribosomal protein L15
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