J3_6OM7_031

3D structure

PDB id

6OM7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human ribosome nascent chain complex (PCSK9-RNC) stalled by a drug-like small molecule with AA and PE tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CA*UUGAAAAGAAC*GAGUUCAAGAGGGCG

Length

28 nucleotides

Bulged bases

6OM7|1|t|G|403, 6OM7|1|t|G|407

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OM7_031 not in the Motif Atlas

Geometric match to J3_5TBW_062

Geometric discrepancy: 0.1307

The information below is about J3_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_91149.1

Basepair signature

cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW

Number of instances in this motif group

6

Unit IDs

6OM7|1|D|C|19
6OM7|1|D|A|20
*
6OM7|1|t|U|374
6OM7|1|t|U|375
6OM7|1|t|G|376
6OM7|1|t|A|377
6OM7|1|t|A|378
6OM7|1|t|A|379
6OM7|1|t|A|380
6OM7|1|t|G|381
6OM7|1|t|A|382
6OM7|1|t|A|383
6OM7|1|t|C|384
*
6OM7|1|t|G|395
6OM7|1|t|A|396
6OM7|1|t|G|397
6OM7|1|t|U|398
6OM7|1|t|U|399
6OM7|1|t|C|400
6OM7|1|t|A|401
6OM7|1|t|A|402
6OM7|1|t|G|403
6OM7|1|t|A|404
6OM7|1|t|G|405
6OM7|1|t|G|406
6OM7|1|t|G|407
6OM7|1|t|C|408
6OM7|1|t|G|409

Current chains

Chain D

5.8S ribosomal RNA

Chain t

28S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Q

60S ribosomal protein L17

Chain Z

60S ribosomal protein L26

Chain m

60S ribosomal protein L39

Chain y

Proprotein convertase subtilisin/kexin type 9