J3_6OPE_004

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

6OPE|1|QA|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OPE_004 not in the Motif Atlas

Homologous match to J3_4LFB_001

Geometric discrepancy: 0.0905

The information below is about J3_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

6OPE|1|QA|C|826
6OPE|1|QA|U|827
6OPE|1|QA|A|828
6OPE|1|QA|G|829
*
6OPE|1|QA|C|857
6OPE|1|QA|G|858
6OPE|1|QA|A|859
6OPE|1|QA|A|860
6OPE|1|QA|G|861
*
6OPE|1|QA|C|868
6OPE|1|QA|G|869
6OPE|1|QA|U|870
6OPE|1|QA|U|871
6OPE|1|QA|A|872
6OPE|1|QA|A|873
6OPE|1|QA|G|874

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QB

30S ribosomal protein S2

Chain QH

30S ribosomal protein S8