J3_6OPE_042

3D structure

PDB id

6OPE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of tRNA^ Ala(GGC) U32-A38 bound to near-cognate 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

6OPE|1|XA|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_6OPE_042 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1281

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

6OPE|1|XA|C|1237
6OPE|1|XA|A|1238
6OPE|1|XA|A|1239
6OPE|1|XA|U|1240
6OPE|1|XA|G|1241
*
6OPE|1|XA|C|1296
6OPE|1|XA|C|1297
6OPE|1|XA|C|1298
6OPE|1|XA|A|1299
6OPE|1|XA|G|1300
6OPE|1|XA|U|1301
6OPE|1|XA|U|1302
6OPE|1|XA|C|1303
*
6OPE|1|XA|G|1334
6OPE|1|XA|C|1335
6OPE|1|XA|C|1336
6OPE|1|XA|G|1337

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XM

30S ribosomal protein S13

Chain XU

30S ribosomal protein Thx